Click on the image to download the corresponding dataset!

Early Arabidopsis Embryo (17.6 MB)

This dataset shows an early embryo of Arabidopsis thaliana within its ovule. It is an interesting example on how to clean a dataset.

Used in this tutorial.

Dataset from Dr. Saiko Yoshida.

Yoshida et al. 2014

Shoot Apical Meristem (460 MB)

This dataset of a shoot apical meristem of Arabidopsis thaliana provides a good example of 3D segmentation and basic cleaning of stack.

Used in this tutorial.

Dataset from Dr. Agata Burian.

Cortical Microtubules (580 MB)

This dataset is also of a shoot apical meristem of Arabidopsis thaliana, but combined with a labelling of cortical microtubules. This demonstrates how to use the micro-fibril orientation process.

Used in this tutorial.

Dataset from Dr. Agata Burian.

Hypocotyl cross-section (586 MB)

This dataset contains cross-sections of three hypocotyls of Arabidopsis thaliana, 14, 21 and 28 days old. This demonstrates how to use the automated cell classification.

Used in this tutorial.

Dataset from Dr. Laura Ragni.